rs29313711 SNP Detail

Summary

• ID
  rs29313711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156482141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATAACGT AGCCACCTCC
  AGGCTGATAT CTGAGCCCTG CTTTCCACAC GGTCAAGCCT TTCAGAGGCA GCCAGCCTAT
  GGCTTGTATC AAACTCTATA TTTAGGAAGA ACAACTGTGA GCTATGACAG GAATTCTCTT
  TAACACTTTA GCCTTAAAGC GAGTTCCCTT CTAGCCCGAG CCAGGAGCAG CTCTCAGGAC
  Y
  GGAGAGAGAC AGAGCACTCC AGCTATTTCA GCCACATGAA AAGCACTGGA ATTGAGATCC
  CCGCTCAGAG GACACCGGGA GTTCCTTCTA TCCTGTAAAG CGCTTTTTGT GTTTTTGCAC
  CTGGCCGCCT GGGACTGTCC TCAGGCAGTA AACCAATCCA GAGAGCAGGT AAGCAGAAGG
  ACCCAGCTTT CACTCTCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38507204	NES09662028	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29313711					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38507204	NES09662028	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156482141 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	within coordinates
Smpx	small muscle protein, X-linked	within coordinates
Tssr162436	transcription start site region 162436	132 bp downstream
Tssr162437	transcription start site region 162437	69 bp downstream
Tssr162438	transcription start site region 162438	11 bp downstream
Tssr162439	transcription start site region 162439	8 bp upstream
Tssr162440	transcription start site region 162440	39 bp upstream
Tssr162441	transcription start site region 162441	61 bp upstream