rs29313712 SNP Detail

Summary

• ID
  rs29313712
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156482099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAATGCA GCCAGCCTCC
  TCAAGAAGAT TAGGAGGGCA GAAAGATAAC GTAGCCACCT CCAGGCTGAT ATCTGAGCCC
  TGCTTTCCAC ACGGTCAAGC CTTTCAGAGG CAGCCAGCCT ATGGCTTGTA TCAAACTCTA
  TATTTAGGAA GAACAACTGT GAGCTATGAC AGGAATTCTC TTTAACACTT TAGCCTTAAA
  R
  CGAGTTCCCT TCTAGCCCGA GCCAGGAGCA GCTCTCAGGA CTGGAGAGAG ACAGAGCACT
  CCAGCTATTT CAGCCACATG AAAAGCACTG GAATTGAGAT CCCCGCTCAG AGGACACCGG
  GAGTTCCTTC TATCCTGTAA AGCGCTTTTT GTGTTTTTGC ACCTGGCCGC CTGGGACTGT
  CCTCAGGCAG TAAACCAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38507205	NES09662027	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	A	A	G		G
ss325987888	CHEV_X_154137035	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29313712					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38507205	NES09662027	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156482099 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	within coordinates
Smpx	small muscle protein, X-linked	within coordinates
Tssr162436	transcription start site region 162436	90 bp downstream
Tssr162437	transcription start site region 162437	27 bp downstream
Tssr162438	transcription start site region 162438	10 bp upstream
Tssr162439	transcription start site region 162439	50 bp upstream
Tssr162440	transcription start site region 162440	81 bp upstream
Tssr162441	transcription start site region 162441	103 bp upstream