rs29313748 SNP Detail

Summary

• ID
  rs29313748
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:105075138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGCACAAG CCCTTATTAG ATAGCATTAT TTATTGCTCT
  GATATTTGAG GACTGAGACA CATTCCTGCC CTCCTCTCCT TCCTTATATT ATATTATATT
  R
  TATGGCTCTC AAGGTCAGAG TTAAATTTTC ATAACTGTGA AACTCTATTC CATTAGACAT
  AGAGTCGTAT ATAATGTTGA CACTTGAATT AAAAATGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38515238	mCV24201852	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss147491411	ENSMUSSNP1589270	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss323446510	CHEV_10_104676333	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29313748					SNP	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105075138 () rs orientation: forward

Symbol	Name	Function Class
Rr212535	regulatory region 212535	538 bp distal
Tmtc2	transmembrane and tetratricopeptide repeat containing 2	within coordinates
Tssr95614	transcription start site region 95614	1120 bp downstream
Tssr95615	transcription start site region 95615	761 bp downstream