rs29314145 SNP Detail

Summary

• ID
  rs29314145
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13429574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCAAAACG TGTCCTGGTA CAATCCTCAC CGATGATGTG
  TCTACTCTTT CTACGATACT TTTCTCTGCC CTTGTATTCC CTTCCTTCCT GCGATTCTTA
  K
  AGATTGCTCA TCATGGAGAG CTCTGGTCGT ATTTTTACAT GTTTTCCCAA GCTTATTACC
  CATATCGATG TGTGGCAGGG ATAGACGTTT GTGGCAGGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss38515572	mCV23067225	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss146822717	ENSMUSSNP5785626	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29314145					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13429574 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	345 bp distal
Pex3	peroxisomal biogenesis factor 3	688 bp upstream
Rr368928	regulatory region 368928	519 bp downstream
Rr427802	regulatory region 427802	1003 bp distal
Rr427803	regulatory region 427803	926 bp distal
Rr427804	regulatory region 427804	721 bp distal
Rr427805	regulatory region 427805	198 bp distal
Rr427806	regulatory region 427806	562 bp proximal
Tssr92399	transcription start site region 92399	591 bp downstream
Tssr92400	transcription start site region 92400	572 bp downstream
Tssr96771	transcription start site region 96771	960 bp upstream
Tssr96772	transcription start site region 96772	769 bp upstream
Tssr96773	transcription start site region 96773	745 bp upstream
Tssr96774	transcription start site region 96774	704 bp upstream
Tssr96775	transcription start site region 96775	677 bp upstream
Tssr96776	transcription start site region 96776	664 bp upstream