rs29314172 SNP Detail

Summary

• ID
  rs29314172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127497945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTCTCTGT GTGTCTCTCT TCCCTGTCTC GCCCGCCTCT
  GCTCTGCTGG AATTTCTGGT TCTGTCAGGA GCTGCGGGGG CGGCTTGGCT CTGACCTCTC
  Y
  CCCTCCCCCT CCCCCTTCCC AGGCCCAGCC ACCCCCCTCC ACTCACCTCG GGTCCCCTCC
  CAGGTCTCGC CCTCCCTATA AGTGCTCCCC GAGTTTTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss38515060	mCV23894317	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs29314172					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127497945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2370	CpG island 2370	629 bp proximal
Gm16229	predicted gene 16229	1763 bp upstream
Nab2	Ngfi-A binding protein 2	within coordinates
Rr224427	regulatory region 224427	within coordinates
Rr402332	regulatory region 402332	within coordinates
Stat6	signal transducer and activator of transcription 6	1119 bp downstream
Tssr99809	transcription start site region 99809	652 bp upstream
Tssr99810	transcription start site region 99810	618 bp upstream
Tssr99811	transcription start site region 99811	409 bp upstream
Tssr99812	transcription start site region 99812	1394 bp downstream