rs29314331 SNP Detail

Summary

• ID
  rs29314331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:13429552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGATGTTTC TGTAAAGGGT CATATCAAAA CGTGTCCTGG
  TACAATCCTC ACCGATGATG TGTCTACTCT TTCTACGATA CTTTTCTCTG CCCTTGTATT
  Y
  CCTTCCTTCC TGCGATTCTT ATAGATTGCT CATCATGGAG AGCTCTGGTC GTATTTTTAC
  ATGTTTTCCC AAGCTTATTA CCCATATCGA TGTGTGGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss38515858	mCV23067214	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss146822707	ENSMUSSNP1343805	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29314331					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13429552 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	Intron
Cpgi1315	CpG island 1315	323 bp distal
Pex3	peroxisomal biogenesis factor 3	666 bp upstream
Rr368928	regulatory region 368928	497 bp downstream
Rr427802	regulatory region 427802	981 bp distal
Rr427803	regulatory region 427803	904 bp distal
Rr427804	regulatory region 427804	699 bp distal
Rr427805	regulatory region 427805	176 bp distal
Rr427806	regulatory region 427806	584 bp proximal
Tssr92399	transcription start site region 92399	569 bp downstream
Tssr92400	transcription start site region 92400	550 bp downstream
Tssr96771	transcription start site region 96771	938 bp upstream
Tssr96772	transcription start site region 96772	747 bp upstream
Tssr96773	transcription start site region 96773	723 bp upstream
Tssr96774	transcription start site region 96774	682 bp upstream
Tssr96775	transcription start site region 96775	655 bp upstream
Tssr96776	transcription start site region 96776	642 bp upstream