rs29314447 SNP Detail

Summary

• ID
  rs29314447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3672915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAAAGC AGCTACTGCA
  ATTTAGGGCC AGTTGATGGA TTTAAGGGCT GCTGGCTCTT TGTTGAAATG CATATTAATA
  AAGAAGAGGG CTTTATAAAA ACTCACTGTT GCGTACAGGG ATCCACAAGG GATCACAGTG
  CAATGATTAT TATATTCACA CAACTAAAGA GGTAGGTAGA GTGGGTTCCC TTGTGTTGGG
  Y
  TTTGCATTCT TAAAAGGAAG TAGGCTTTGG AAGAACTTAT CCATAAAATC TGCAGAATGA
  ACTCAACGCC AGCAATTAGA TTTAAGCCAT CTTTTCTTCT TATCCACTAC TGCTACCAAA
  AAGTTACTAT TACTGTCAAG ACTCTGCGTG TGTGTGTGTC GGTCCAGAAA TTAACACACT
  AGGGCTGAAT TGAATTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38516727	mCV25387154	ABI	CRAMUS_MOUSE	f	SNP	T	T	T		C
ss52125805	NES15247327	PERLEGEN	MM_PANEL2	r	SNP				G	G	G		G	G	G	G		A
ss146748575	ENSMUSSNP295425	ENSEMBL	ENSEMBL_Sanger	r	SNP			A		G
ss323242457	CHEV_10_6623626	CHEVERUD	SCREENING_POP	r	SNP							A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29314447					SNP	T	T	T	C	C	C	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52125805	NES15247327	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3672915 () rs orientation: forward

Symbol	Name	Function Class
A330032P22Rik	RIKEN cDNA A330032P22 gene	within coordinates
Gm30164	predicted gene, 30164	within coordinates
Gm56946	predicted gene, 56946	within coordinates
Rr219187	regulatory region 219187	1315 bp distal
Rr227319	regulatory region 227319	within coordinates