rs29315811 SNP Detail

Summary

• ID
  rs29315811
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:122528126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAAGGAG CTTAAGGTTT
  CTGCTGCTAT TCAAAAGAAG CCAGCAAGGC CTCAGTTTTC AGGTGGCTTT AATTGGATGG
  GGGAAAATAA ACACATTTTG ATCAAGATTA TGTTTGTCAG GCACTTTGAA ATAATCTCAC
  CGCAGACACC AATCTTCTTA GTTATAGTTA ACTTTCCTGG TATCTGTGCA TCCTAAGTAT
  W
  ACTGGGGCCT GTCAAGTTAG CATATTTTTT TCTTCTGACT AGAAAGTGCT TTTTCATAAT
  ATAATGTCTT TGGAAATGCA GTAAGCCTTG AAACCAATCT GTCCACTCTC TGCGGGGCGT
  TAAGACGTCG ATCCTGCTAC TTGGAAATGG ACTTCTTAAT TCTCAAGATC AGGATTCAAA
  TCATAAGTCA GATTTTTATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38521701	mCV23854514	ABI	CRAMUS_MOUSE	f	SNP		T					A		A
ss52249054	NES15337099	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	A	A		A	A	A	A	A	A	A	A	A
ss147651262	ENSMUSSNP1830103	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29315811					SNP	A	T	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52249054	NES15337099	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:122528126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2304	CpG island 2304	1269 bp proximal
Ppm1h	protein phosphatase 1H (PP2C domain containing)	within coordinates
Rr226290	regulatory region 226290	276 bp proximal