rs29316011 SNP Detail

Summary

• ID
  rs29316011
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:18993776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAA TTATAGTTTA AAGGTGAGGT
  R
  AGAAGAGATC TCTTGTTAAT CCCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38518982	mCV23306992	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		A
ss61253809	NES16863956	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	A	G	G		G	G	G		G
ss146923158	ENSMUSSNP2125597	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss323263843	CHEV_10_18837834	CHEVERUD	SCREENING_POP	f	SNP													A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29316011					SNP	A	A	A	A	A	A	A	G	G	A	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61253809	NES16863956	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:18993776 () rs orientation: forward

Symbol	Name	Function Class
Gm67464	predicted gene, 67464	within coordinates
Rr222171	regulatory region 222171	1372 bp proximal
Rr226792	regulatory region 226792	177 bp distal
Tssr92530	transcription start site region 92530	582 bp downstream
Tssr96897	transcription start site region 96897	968 bp upstream
Tssr96898	transcription start site region 96898	950 bp upstream
Tssr96899	transcription start site region 96899	922 bp upstream