rs29316227 SNP Detail

Summary

• ID
  rs29316227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27953340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT TCCTTGCTTC CCCCCTTCCC
  R
  CTATTCTATT TTAAATGAGG AACTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss38521915	mCV23522909	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss147035156	ENSMUSSNP4311581	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs29316227					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27953340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1406	CpG island 1406	1768 bp distal
Cpgi1407	CpG island 1407	805 bp distal
Ptprk	protein tyrosine phosphatase receptor type K	within coordinates