rs29316743 SNP Detail

Summary

• ID
  rs29316743
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126680727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT GAGGAGGCTT TGGCCAGTCC
  K
  GAAGCTCGCG GTACACGAAG TTTTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MSM/Ms	PWD/PhJ	SM/J	WSB/EiJ
ss38522338	mCV23468453	ABI	CRAMUS_MOUSE	f	SNP	T			G
ss50943637	NES14265076	PERLEGEN	MM_PANEL2	f	SNP		G	T		T		G			G		T
ss147726500	ENSMUSSNP3103155	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G				G			T
ss323528328	CHEV_10_126281914	CHEVERUD	SCREENING_POP	f	SNP								G			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MSM/Ms	PWD/PhJ	SM/J	WSB/EiJ
rs29316743					SNP	T	G	T	G	T	G	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50943637	NES14265076	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126680727 () rs orientation: forward

Symbol	Name	Function Class
Gm66841	predicted gene, 66841	1061 bp upstream
Rr440688	regulatory region 440688	within coordinates
Rr440689	regulatory region 440689	22 bp proximal
Rr440690	regulatory region 440690	571 bp proximal