rs29317016 SNP Detail

Summary

• ID
  rs29317016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86167859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGTTTTA ATGGCCTTCC
  CTGAGATGGA ATTGGGCTGA AATGATTTGC AGCTTTCTAG ATTTTCTAAG CGTGTGTGGA
  TCGGGTTTAT TTTTAGCCAC AGGCATTCAT TTCTTGCCAA AAAAACCTGC TTAAATAAAA
  CCAAGATTAA TATTTTTACT TAACGGAAAG AGTTAGTCAG GACAAGCTTT GAACTGGAGC
  Y
  TGCTTATCTT GACGGGGGGA GTGCATTTTA TAATGTCTGG CCTTGGCTTC AACATCAACA
  AAAAGGGCCT TTGAAACTGA CAAGGGAGAA GAGCCCTGGG GAACCAGGAT AGGATGTAGG
  AAGTGCCTAT TTGGGGGGAG GCAGGGAAGG AGGGGTGTCT TCCTGGAAAG TGGGAAGAAG
  GCCCTGGTTT TACAAGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss38525343	mCV24714879	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss147219100	ENSMUSSNP5858441	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323373797	CHEV_10_85794740	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29317016					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86167859 () rs orientation: forward

Symbol	Name	Function Class
Rr436452	regulatory region 436452	within coordinates
Rr436453	regulatory region 436453	712 bp proximal
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates
Tssr94967	transcription start site region 94967	366 bp downstream
Tssr94968	transcription start site region 94968	335 bp downstream