rs29317125 SNP Detail

Summary

• ID
  rs29317125
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86165122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGATCC TCCTAGCTAT
  TTCCACCAGC TATTCACTAC CTTGCTGGCA TGTAGAAACA GAGCAGACAT TTCTGAATGC
  TCAAACCACA GTAACACCTC CTGCTCCTCC TGGTGCTTTC TGGGAACAGA ATCGCAGTCT
  GCAGGTCTGA TGTGCAGAGG GGAGGTCCCT TGGCTTAATG GTGGTCCACT TCCTAGACCT
  Y
  TCCCAGAATC CCTCAGCTTT TCTCGCAAAC AAAATCCCAA TTAGGAAAAA AAAAAAAACC
  AATGCTATGG ACAGCCCCTG AGATGCTGCC CGCTGTTCTG CTCTCAGAAA CGGCCCGACC
  TGAAAGCTCA AATGTTCTGA GAACCGTTGG AGGGCACGGT ATTTTTCTGG GCACTGCTTC
  AAAGGGGCTG TGGTTGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38519852	mCV24714892	ABI	CRAMUS_MOUSE	f	SNP	T	C	C					T		T
ss47922477	NES12032760	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		T	T	T	T		T	C	T	T		T
ss147219085	ENSMUSSNP926486	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss323373794	CHEV_10_85792003	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29317125					SNP	T	C	C	C	C	T	C	T	T	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922477	NES12032760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86165122 () rs orientation: forward

Symbol	Name	Function Class
Gm57766	predicted gene, 57766	within coordinates
Rr217190	regulatory region 217190	322 bp distal
Rr229228	regulatory region 229228	within coordinates
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates