rs29317441 SNP Detail

Summary

• ID
  rs29317441
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13427823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATAGTGGT AACAGTTCTT AAAACTCAAG TTTTAAAAAT
  TCTTTTAAAC TCCCTTTTTG TGTTGTTCAA AAGATTCCCT TCTTAAAATC CCATAATTAT
  K
  AACTGAGGGT TGTCTTTCCA AGACAAAGGG TTTAAAGCAG TGTGTGTGTG TGTGTGTGTG
  TGTGTTGCTC CTTCCCTGGG ACCCAATGCA GTCAGCCTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38524771	mCV23066993	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss146822647	ENSMUSSNP5170995	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29317441					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13427823 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	828 bp upstream
Cpgi1315	CpG island 1315	772 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	860 bp upstream
Rr427802	regulatory region 427802	488 bp proximal
Rr427803	regulatory region 427803	749 bp proximal
Rr427804	regulatory region 427804	826 bp proximal
Rr427805	regulatory region 427805	1031 bp proximal
Tssr92399	transcription start site region 92399	1108 bp upstream
Tssr92400	transcription start site region 92400	1166 bp upstream
Tssr96771	transcription start site region 96771	776 bp downstream
Tssr96772	transcription start site region 96772	920 bp downstream
Tssr96773	transcription start site region 96773	984 bp downstream
Tssr96774	transcription start site region 96774	1032 bp downstream
Tssr96775	transcription start site region 96775	1061 bp downstream
Tssr96776	transcription start site region 96776	1076 bp downstream