rs29317679 SNP Detail

Summary

• ID
  rs29317679
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127346177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAAACCAA TTTACTGCCT CATTGGGCGG CAGTGTTGAT
  GTAGGGGTGT CGTGGAACAG GGAGAGCGGC TGTTCTCTCC CTATACTTGC AGGGTGCCCC
  S
  CCTTCTCCCT CGCCTTACCG AGCCGGCAGC TGTCCCTAAT TAGAGCGGCG GTTTAATTGG
  ATTTATCAGC AGTTAATAGG AAATTAAGCA AAGGGCCCG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38520859	mCV22968925	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	G
ss147732725	ENSMUSSNP1092611	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29317679					SNP	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127346177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2359	CpG island 2359	1982 bp distal
Cpgi2360	CpG island 2360	712 bp distal
Cpgi2361	CpG island 2361	1233 bp proximal
Rr402328	regulatory region 402328	1643 bp downstream
Rr402329	regulatory region 402329	977 bp downstream
Rr440928	regulatory region 440928	1159 bp distal
Rr440929	regulatory region 440929	547 bp distal
Rr440930	regulatory region 440930	1618 bp proximal
Rr440931	regulatory region 440931	1781 bp proximal
Rr440932	regulatory region 440932	1976 bp proximal
Stac3	SH3 and cysteine rich domain 3	1485 bp downstream