rs29318594 SNP Detail

Summary

• ID
  rs29318594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67974358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA TAGAAATGAG CTCACACAGA
  Y
  TGAAGCAGCA AGCGCGGGGC CCACG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38525795	mCV24239183	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss147146195	ENSMUSSNP1202466	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
ss323351607	CHEV_10_67601276	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29318594					SNP	T	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67974358 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Cpgi1679	CpG island 1679	1835 bp distal
Rr384864	regulatory region 384864	128 bp downstream
Rr433197	regulatory region 433197	1913 bp distal
Rr433198	regulatory region 433198	1973 bp distal
Rr433199	regulatory region 433199	1412 bp distal
Rr433200	regulatory region 433200	87 bp distal
Rr433201	regulatory region 433201	732 bp proximal
Tssr3230	transcription start site region 3230	1792 bp upstream
Tssr3231	transcription start site region 3231	1771 bp upstream
Tssr3232	transcription start site region 3232	1694 bp upstream
Tssr93877	transcription start site region 93877	1501 bp downstream
Tssr93878	transcription start site region 93878	732 bp downstream
Tssr97991	transcription start site region 97991	1916 bp upstream
Tssr97992	transcription start site region 97992	1904 bp upstream
Tssr97993	transcription start site region 97993	1890 bp upstream
Tssr97994	transcription start site region 97994	1851 bp upstream
Tssr97995	transcription start site region 97995	1832 bp upstream
Tssr97996	transcription start site region 97996	1820 bp upstream
Tssr97997	transcription start site region 97997	1806 bp upstream
Tssr97998	transcription start site region 97998	1746 bp upstream
Tssr97999	transcription start site region 97999	1320 bp upstream
Tssr98000	transcription start site region 98000	1154 bp upstream