rs29318752 SNP Detail

Summary

• ID
  rs29318752
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8762927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTAAAAA CCAATCAAAA
  AATTTTTTCT AAGAGATGAC AGTGCCTATC CTATTTGATT TTGTGGCTGC TCACTTTGTG
  AAACTAAAGA AACCCACGGA ATCTGCCCCT TATTAAGGAG GTGGAGTGGA GAGGGGATGA
  AGTGAGGGTC CCCCGGATAG AACAATTACT TCTGAAGTGT CTTCATCTCT TTCTCAGCTT
  K
  CATACATTGA GAACAGCAGT CTAAGTAATG GGTGAATAGC TCTCACCCAC AATGTCAAAA
  CGTAAAAAGA AGTAAAACCC TAGCATAGCA GTATGGGCCT ATAAGGCTGG GAAGTAGAGA
  CATCGGGATT TTCGTGGCTT TAGTGGCTGC CATTCCAGAC AGCTGGTAAG CTCCAGGTTC
  ATGGAGAGAT TGATCATGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38526014	mCV23688377	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T
ss146767825	ENSMUSSNP3344273	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
ss323245677	CHEV_10_8606981	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29318752					SNP	G	G	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8762927 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1286	CpG island 1286	417 bp distal
Gm26674	predicted gene, 26674	305 bp downstream
Rr427412	regulatory region 427412	623 bp distal
Sash1	SAM and SH3 domain containing 1	1113 bp upstream
Tssr96654	transcription start site region 96654	1485 bp upstream
Tssr96655	transcription start site region 96655	1298 bp upstream
Tssr96656	transcription start site region 96656	1236 bp upstream
Tssr96657	transcription start site region 96657	1153 bp upstream
Tssr96658	transcription start site region 96658	1107 bp upstream
Tssr96659	transcription start site region 96659	1082 bp upstream
Tssr96660	transcription start site region 96660	1058 bp upstream
Tssr96661	transcription start site region 96661	967 bp upstream
Tssr96662	transcription start site region 96662	938 bp upstream
Tssr96663	transcription start site region 96663	640 bp upstream
Tssr96664	transcription start site region 96664	571 bp upstream