rs29320123 SNP Detail

Summary

• ID
  rs29320123
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3669450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAACTACT AGTTCTACTT
  CTTAAAGAGG CATGACTAGT TGAACCTGAG ATGCCCTCAT CTGAGTGTGA GCTAAAGGGA
  TGCTGCTTTC CCCTGATAAT TTGTCTTCTT TTTTAAAAAA TTTCAATAAA ATGGCATATT
  GGTGATTGTC AAATATTAAA GAAATTCTTT TGCCTTTGTT GTAAAGAACA AAGATAAATT
  K
  CCTTGGGATC TGGATTTATG GAGATGGTAA AAGTCCTCAT AAATGGGTTC CAGGTGATAG
  ACCCAACTGG CTGTCAGGCC ACCCTTGGGT TACTACATGG ATATTAGCAT AACTCAGAAA
  TATTGGCAGA ACAGGTATGC TGATGTTTTT CTTCTACCAT GTCTTTGGAA GGATTTCCAC
  TGAAGTTACA ATGCCCAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38527510	mCV25387227	ABI	CRAMUS_MOUSE	f	SNP	G	G		T		T
ss52125767	NES15247318	PERLEGEN	MM_PANEL2	r	SNP			A		A	A	A		C	A	A	C		A
ss146748647	ENSMUSSNP2432837	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	C				A
ss323242485	CHEV_10_6627091	CHEVERUD	SCREENING_POP	r	SNP								C					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29320123					SNP	G	G	T	T	T	T	T	G	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52125767	NES15247318	PERLEGEN	MM_PANEL	r	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3669450 () rs orientation: forward

Symbol	Name	Function Class
A330032P22Rik	RIKEN cDNA A330032P22 gene	within coordinates
Gm30164	predicted gene, 30164	1691 bp downstream
Gm56946	predicted gene, 56946	within coordinates
Rr426848	regulatory region 426848	1277 bp distal
Rr426849	regulatory region 426849	629 bp distal
Tssr92213	transcription start site region 92213	1282 bp downstream