rs29320560 SNP Detail

Summary

• ID
  rs29320560
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:103202966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTTCAAGT GTCAACGATC ATAAATTTTA TGTCTTGTCC
  TGCTTAAGGA GGAGTTCAGT TATTTTTACA GAGGCAAAGC TTTGTGTTCA TCCATGCATA
  K
  TTTAAGGATT CTCCACGTGG CTTAGTTGAA AGCATGCTTT GACTATTGGA AGAGGTAAGT
  CAGTCTTTAG CTGGTAGAGA TCCTTTGAAG GAGAATCTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38531146	mCV24987592	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					G		T
ss52209776	NES15330524	PERLEGEN	MM_PANEL2	f	SNP	T		T	G	T	T	T		T	T	G	T		T	G	G	T		T
ss147416492	ENSMUSSNP5039548	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss323430994	CHEV_10_102829739	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29320560					SNP	T	T	T	G	T	T	T	G	T	T	G	T	T	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52209776	NES15330524	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:103202966 () rs orientation: forward

Symbol	Name	Function Class
6430590A10Rik	RIKEN cDNA 6430590A10 gene	84 bp downstream
Cpgi2165	CpG island 2165	343 bp proximal
Gm66970	predicted gene, 66970	within coordinates
Rr385217	regulatory region 385217	892 bp upstream
Rr438423	regulatory region 438423	213 bp proximal
Rr438424	regulatory region 438424	749 bp proximal
Rr438425	regulatory region 438425	1359 bp proximal
Slc6a15	solute carrier family 6 (neurotransmitter transporter), member 15	678 bp upstream
Tssr95604	transcription start site region 95604	547 bp upstream
Tssr95605	transcription start site region 95605	587 bp upstream
Tssr95606	transcription start site region 95606	643 bp upstream
Tssr99159	transcription start site region 99159	1957 bp downstream