rs29320732 SNP Detail

Summary

• ID
  rs29320732
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12746623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTCCTTC CATTAACAAG
  CATCTATATA AGGCCTACTG AGGCAGATGA TACATAGAAA TCCAACATAG ATCTTGCCCT
  TGAAGAACGT AGAATTCATT CAGGTGAGAT AAGACATGTA AGCAAAAACA TTGGAGATTC
  CTGCTATCAG ATCAAACATG TTGTATAGAT TACCATCTCT GTGACTGACA GGTAAGACTT
  Y
  TGTTAGCTCT CGGTTTCATC CGATTCAGGC TGAGGCTGGC CTTTGCTTTT GGGCCTGAGG
  AGTAGCAGAA GCTGTGGTGG AGTGTGCACA CCTCATGGCT GTCAGGAAGC AGAAAGCCAT
  CCAGAAGGAG GTCCAGAAAA AGACCTGCCC TCCAAAGAGA TGAGTCCACT AACTTACTGT
  CTCCAAGTAG GTCCGCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38531688	mCV23882736	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146804321	ENSMUSSNP6084082	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss323253705	CHEV_10_12590677	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29320732					SNP	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12746623 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1301	CpG island 1301	1136 bp distal
Gm66629	predicted gene, 66629	within coordinates
Rr224421	regulatory region 224421	1022 bp distal
Tssr3138	transcription start site region 3138	1392 bp upstream
Tssr92369	transcription start site region 92369	1898 bp downstream
Tssr96726	transcription start site region 96726	1742 bp upstream
Tssr96727	transcription start site region 96727	1657 bp upstream
Tssr96728	transcription start site region 96728	1362 bp upstream
Tssr96729	transcription start site region 96729	1238 bp upstream
Utrn	utrophin	1514 bp upstream