rs29321577 SNP Detail

Summary

• ID
  rs29321577
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13428944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCCCCAGC CGCCGCTTAC TGATCCGGGA CGCCTGGGTC
  CGTCCGCAAA TAGCTCCCGG GTGCCTCGTC TTTTCCCGTC CTCCTGGAAG CAAGGTCCGC
  K
  CCCGCCGCGT TCCGCTGTCC TCTCTTCTCT CGTCCCTCGG CCCGGAGTCT CTGAGCGGCG
  GAGGTATGGA GGAGAAGGTG GAGTCCACCA CTACTCCAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss38528559	mCV23067202	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss146822692	ENSMUSSNP6373591	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs29321577					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13428944 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	within coordinates
Pex3	peroxisomal biogenesis factor 3	58 bp upstream
Rr368928	regulatory region 368928	within coordinates
Rr427802	regulatory region 427802	373 bp distal
Rr427803	regulatory region 427803	296 bp distal
Rr427804	regulatory region 427804	91 bp distal
Rr427805	regulatory region 427805	within coordinates
Rr427806	regulatory region 427806	1192 bp proximal
Tssr92399	transcription start site region 92399	within coordinates
Tssr92400	transcription start site region 92400	45 bp upstream
Tssr96771	transcription start site region 96771	330 bp upstream
Tssr96772	transcription start site region 96772	139 bp upstream
Tssr96773	transcription start site region 96773	115 bp upstream
Tssr96774	transcription start site region 96774	74 bp upstream
Tssr96775	transcription start site region 96775	47 bp upstream
Tssr96776	transcription start site region 96776	34 bp upstream