rs29321963 SNP Detail

Summary

• ID
  rs29321963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27492360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA TGGGGGTGGG GGTGGGAGTG
  R
  GAGCTTTCCT CTGCAGGAAC GGAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss38532756	mCV22588274	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss147030434	ENSMUSSNP3292072	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss323280478	CHEV_10_27336170	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs29321963					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27492360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1405	CpG island 1405	293 bp proximal
Gm36962	predicted gene, 36962	1036 bp upstream
Lama2	laminin, alpha 2	within coordinates
Rr224629	regulatory region 224629	within coordinates
Tssr97144	transcription start site region 97144	441 bp downstream
Tssr97145	transcription start site region 97145	451 bp downstream
Tssr97146	transcription start site region 97146	467 bp downstream
Tssr97147	transcription start site region 97147	531 bp downstream
Tssr97148	transcription start site region 97148	565 bp downstream
Tssr97149	transcription start site region 97149	655 bp downstream