rs29322171 SNP Detail

Summary

• ID
  rs29322171
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85892102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTTGCTTG TTGATAGATG CAGGAGGGTC CAGCCTCTGT
  AAGCAGCATC ATTCACTGGA CAGGTGGTTT TGGGCTGTGT GAGAAAGCTA GCTAAGCATG
  S
  GTCAGGGAGC ACGTTTGCAA ATAGCATTCT TCCATAGTTA CTACGTCAAG TTCCTGGTCA
  AGTTTCTTTC CTGATTTCTC TCAATATGAA CTGTGACCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38533748	mCV27559960	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
ss147216526	ENSMUSSNP51246	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		G
ss323373260	CHEV_10_85518983	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29322171					SNP	C	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85892102 () rs orientation: forward

Symbol	Name	Function Class
Rr217171	regulatory region 217171	99 bp proximal
Rr223758	regulatory region 223758	1013 bp proximal
Syn3	synapsin III	within coordinates
Tssr98759	transcription start site region 98759	1380 bp downstream
Tssr98760	transcription start site region 98760	1397 bp downstream