rs29322791 SNP Detail

Summary

• ID
  rs29322791
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12744245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCCCAC CGCACAACCG
  CCCTCCCCAC CCTCTCCTCC CGGACACCGC CCGGGCCCCG CCTTCCCGGG ACCGGAGGTG
  TGTGACAAGC TCTCAGAAGA GGCCACGTCC CCTCTTGGAG ATCGCTAGTC CTGCTGCCCG
  GCTCGGGGCG GTAAACGGAC AGGCGACAGA CAGCCTCTCC TCTCAGGGAG AGACAAAACA
  R
  CAGTACTAAA CTAGACCTAG GAATCTGAGA CCTTGGCGAC CAGTACAGAT TCCCACCTTC
  TCAACCCAGC TCTCTCCCGC CCAGGCAGGG GACGCTGAGC TTCCAGGGAA AGTGCAGAAG
  TTGGCTACAG CTACTTCGGG ACCCGGGCGG TGGAACTGCA GAAAGGTCCC ACCTCCTTTC
  AACCCCCGCC CCATTCCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38536534	mCV23883042	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss146804269	ENSMUSSNP6314356	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss323253695	CHEV_10_12588299	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29322791					SNP	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12744245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1300	CpG island 1300	772 bp distal
Cpgi1301	CpG island 1301	within coordinates
Gm66629	predicted gene, 66629	within coordinates
Rr224421	regulatory region 224421	within coordinates
Tssr3138	transcription start site region 3138	941 bp downstream
Tssr92368	transcription start site region 92368	69 bp downstream
Tssr92369	transcription start site region 92369	466 bp upstream
Tssr96723	transcription start site region 96723	314 bp upstream
Tssr96724	transcription start site region 96724	274 bp upstream
Tssr96725	transcription start site region 96725	197 bp upstream
Tssr96726	transcription start site region 96726	583 bp downstream
Tssr96727	transcription start site region 96727	643 bp downstream
Tssr96728	transcription start site region 96728	988 bp downstream
Tssr96729	transcription start site region 96729	1129 bp downstream
Utrn	utrophin	within coordinates