rs29322954 SNP Detail

Summary

• ID
  rs29322954
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:5205954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGTGTGTGTG TGTGTGTGTA TGTGTGTGTG TGTGTGAGTG TGTGTATGTG TCTGTGTGTG
  TGTGTATGTG TGTGTGTGTG TATGTGTCTG TGTCTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TTAGCCAGAG GACAATTTTT TCAGTCTGTT CTCTCCTTCC
  AACTTTGGGG TCTGGATCAA ATTCAAATTG TCAGGTTCAG TGATAAGAAC TTTTGCTTGC
  TGAAACATCT TGCGAGCTGC ACTTTTGAAG TTTTAGAAAG GCATAATTAT TAAATCATCA
  S
  ACCATGAGTC ATCACCTTTT GAAAAGAACC TTTAAGTTTC CTATTCAAAA AGAGAACGCA
  AGTGGGGGCT AATAGGGAGG ATGCGGATGT GGCAAATACA TTCAAAATGT ACTATACAAA
  ATTCTCAAAG AACTAATAAA AATGAACAGA AGAAAAGACA GTATTTCTCT CTCTCTCTCT
  CTCTCTCTCT GGAAAAAAAC ATAACAAAAG AGAGAAACAA ATATTTAATT CTGGAAAGAT
  CTCAAAGACC ATTTTGAATT AACTACTTGA ACTGTGAGTT TTTAATGAAA CATTTGATGG
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38528433	mCV23713769	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29322954					SNP	G	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:5205954 () rs orientation: forward

Symbol	Name	Function Class
Rr227855	regulatory region 227855	1955 bp distal
Rr230259	regulatory region 230259	802 bp proximal
Syne1	spectrin repeat containing, nuclear envelope 1	within coordinates