rs29323022 SNP Detail

Summary

• ID
  rs29323022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3670328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGATGAAA ACCCTGAAGA
  TCTAAGAGAA TATAAGTTTA ATTGTTACAT TAGTCATGCC AGAAAATGAC AGTCACAGGC
  AGCAGCACCC CAGAGTGTCT CACAGGTGTG ATGGCAGAGC TCTGTTAATT CCCACAGCAG
  GGAGCAGAGA CTCTGGGAGC CTCACCCTGC AGCTCTGCAG TTCTTTCTAG ACAGTGCAAC
  Y
  AGAGACCTCA CCCTTTGCCC AGGCTCCTCT CCACATCACC CCATCCCTGG CTAAAGGGAA
  GAATCAGAGG CCTGTTCCCA AAAGCTTACC CTAAGTGGCT TCTGACAGCC CCTCTGAAGT
  GTCAGAAGCC AGTGGTGACA GGGCTATGGA GTCACACCCT GTCAGAAGCT GGACCCCAAC
  CAAGCCTAAC CAAAGGGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38534957	mCV25387217	ABI	CRAMUS_MOUSE	f	SNP	C		T		T
ss52125779	NES15247310	PERLEGEN	MM_PANEL2	r	SNP		A		G	A	A	G		G	A	A	G		A
ss146748636	ENSMUSSNP4133604	ENSEMBL	ENSEMBL_Sanger	r	SNP					A
ss323242481	CHEV_10_6626213	CHEVERUD	SCREENING_POP	r	SNP								G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29323022					SNP	C	T	T	C	T	T	C	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52125779	NES15247310	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3670328 () rs orientation: forward

Symbol	Name	Function Class
A330032P22Rik	RIKEN cDNA A330032P22 gene	within coordinates
Gm30164	predicted gene, 30164	813 bp downstream
Gm56946	predicted gene, 56946	within coordinates
Rr219187	regulatory region 219187	673 bp proximal
Rr227319	regulatory region 227319	1874 bp proximal