rs29323291 SNP Detail

Summary

• ID
  rs29323291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8858465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTTTGT
  ATACATGTGT ATGTGGGTGC CCATTGAATT CAGAAGAGGG CACTAGACCC TTGGAGAAGG
  TACCACAGGC AGCTGTGGGC CATCCAATGT GGGGACCTCT ACATGAGCAG TTTGTGCTCT
  TAACCAATGA GGAACCTCGC CAGCTTCTGC AGACGTGCAC TTATCTGTCT ATTTATATCC
  Y
  TGTTATGTTC ATTTATTCTC ATCCCCTGTA TGAAGCATGT CCCAGGGATG AGAGTCATTT
  TACATTTTTA TATCTTCATT TCCTCACAGA GGAGTGTTTT TTCAGAATAT TTAAGTTAAA
  GATATTAGTT GAATGAATGG CTTTTGAACC AAATGGATAC AGTTTGCATT GAGTTGTAGG
  TTGACAGTTC ATACGTCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38536554	mCV25039719	ABI	CRAMUS_MOUSE	f	SNP	C	T			C
ss52141018	NES15241412	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C		C	C	C	C		T	C	C	T		C
ss323246164	CHEV_10_8702519	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29323291					SNP	C	T	T	C	C	C	C	C	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52141018	NES15241412	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8858465 () rs orientation: forward

Symbol	Name	Function Class
Rr223851	regulatory region 223851	136 bp proximal
Rr223852	regulatory region 223852	613 bp proximal