rs29323449 SNP Detail

Summary

• ID
  rs29323449
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43356371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGTTTGA TCGCTCAGGT
  GGCCCGCTTG GGAGTATTTT GGAGGTGGAG GCCAACCAGA GATGCTCAGA ATTAATGTTC
  ACTGTTTGGA AGTCAGAGAA CTTCCTTTTA GAAGTAACTT TTGAATGTTT TCCTACAAGT
  AACACGTCAC TGAGTAGAGG GGAGGGTGCC AGAAATCTAT AAAGACCCAG AAAACCCAGG
  M
  GAGTGGGGAA CGTGTGGAAA TGTCCCAGAT AGAGGTTTTA GGTTTGTCTC TGTTTCGGTT
  CCATGCCTGC AGTTTTTCTC TTTTTGCGAC TTTCCACTTT TAATTCATAG GTGTTTGGGT
  TTTGTTTTTA AGCTTCATTT TCGGTGTATG TGTTTTGACT GCATATATAT GCGCCATATC
  CATGCCTGGT CTCCTAAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38535593	mCV25442365	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C	C
ss147088008	ENSMUSSNP3080172	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29323449					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43356371 () rs orientation: forward

Symbol	Name	Function Class
Bend3	BEN domain containing 3	within coordinates
Cpgi1500	CpG island 1500	233 bp distal
Rr224738	regulatory region 224738	within coordinates
Rr384594	regulatory region 384594	1998 bp downstream
Tssr93131	transcription start site region 93131	1724 bp downstream
Tssr93132	transcription start site region 93132	1512 bp downstream
Tssr93133	transcription start site region 93133	1181 bp downstream
Tssr93134	transcription start site region 93134	1126 bp downstream
Tssr93135	transcription start site region 93135	1046 bp downstream
Tssr93136	transcription start site region 93136	1021 bp downstream