rs29323743 SNP Detail

Summary

• ID
  rs29323743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:19484818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGACTTTG TCTATAGATA
  AATACACACA CACACACACA CACACACACA TCACCAAGGA GTTCAGGGTC TTCTAATGCT
  ACATAGAAAC TTTAAGACCA GCCTAGGCTA CATGAGACCC TGTCCGCAAA AATCAAAATC
  ATTAAGAAAA GAAATGTAAT GAGCTTATTT TAATCATGTT TTCTGAAATA TATTATTTTT
  Y
  CCCCGCACAC TTTAGACAGG CATTAATTTT AGTAATTTTC TCTTTATTCA CTTTCATTCT
  ATTTAGCTCT CTGTGGTAAA AAGTGCCACG TTAGAGACAA AACCTGAATC GAAGTATTCA
  CTTGTCACAC CGCACCAGCC AGCTGTCCTA GAGAGTGAGA CGGTGATCTG TGAAGAGCCC
  CTGTCCACAG TGACAGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38536398	mCV23826901	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C	C
ss146930765	ENSMUSSNP781404	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
ss323265786	CHEV_10_19328876	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29323743					SNP	T	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:19484818 () rs orientation: forward

Symbol	Name	Function Class
Ifngr1	interferon gamma receptor 1	within coordinates
Tssr92549	transcription start site region 92549	1784 bp downstream
Tssr92550	transcription start site region 92550	156 bp upstream
Tssr92551	transcription start site region 92551	943 bp upstream
Tssr96927	transcription start site region 96927	132 bp downstream
Tssr96928	transcription start site region 96928	153 bp downstream
Tssr96929	transcription start site region 96929	208 bp downstream