rs29324428 SNP Detail

Summary

• ID
  rs29324428
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4215336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAATTAAT GTTTTCATTG
  ATACTCAAGT AACCTGTATC AAATCTAGGG ACAAGATATT TATCTGGCAT CTAGATTCAA
  TGCTCTTACT GATTTTAAAT CACTAATTCC TTCACTCATC CACAGAGCCT CGCTTTGTGG
  CTCTCAGACT TGGCTGAAAC TCACTCACTA CCTACCCCAT GCAGGCCTCA GGCTCAAGCT
  R
  ACCCTCCAAC TTCAGCCACT GAAGCATCAG GATTTCAGAC ACGAATCATG GCACCGGGCT
  CACCTGACAT CATTTCATCT TTTCCCCCTA GCATTTTAAT GCTTAGTGAC GGGTAATCTA
  ACAAAATTTC AATTTAAGAC TTATTGGCTG CCATGTTAAT ACAATGAGTA TTTAATCAAG
  TGGAGGAAGA AAACAGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38533867	mCV25201842	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss146743549	ENSMUSSNP1940644	ENSEMBL	ENSEMBL_Sanger	r	SNP		C		T
ss323240836	CHEV_10_6081205	CHEVERUD	SCREENING_POP	r	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29324428					SNP	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4215336 () rs orientation: forward

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	1044 bp upstream
Cpgi1267	CpG island 1267	966 bp proximal
Cpgi1268	CpG island 1268	241 bp proximal
Gm67397	predicted gene, 67397	144 bp downstream
Gm67407	predicted gene, 67407	within coordinates
Rr384063	regulatory region 384063	within coordinates
Rr426944	regulatory region 426944	554 bp proximal
Rr426945	regulatory region 426945	1460 bp proximal
Tssr3113	transcription start site region 3113	781 bp upstream
Tssr3114	transcription start site region 3114	1194 bp upstream
Tssr92240	transcription start site region 92240	987 bp upstream
Tssr92241	transcription start site region 92241	1017 bp upstream