rs29324458 SNP Detail

Summary

• ID
  rs29324458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:28906614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA GTATAACCTG GGAGCCCCGG
  Y
  GGCGGGCACG TGCTACCAAG CCAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss38534811	mCV23526452	ABI	CRAMUS_MOUSE	f	SNP							C	T
ss50836131	NES14188924	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	T		T	T	T	C	T
ss147045113	ENSMUSSNP2956162	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs29324458					SNP	C	C	T	T	C	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50836131	NES14188924	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:28906614 () rs orientation: forward

Symbol	Name	Function Class
Gm9824	predicted pseudogene 9824	within coordinates
Gm30619	predicted gene, 30619	1513 bp downstream
Gm68174	predicted gene, 68174	within coordinates
Rr429457	regulatory region 429457	509 bp distal
Rr429458	regulatory region 429458	401 bp distal
Tssr92858	transcription start site region 92858	500 bp downstream
Tssr92859	transcription start site region 92859	119 bp upstream