rs29324757 SNP Detail

Summary

• ID
  rs29324757
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:103205854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA ATGGTATTTT AAAGGTCTTC
  W
  TATATGTTTC TGGAAGAGGA GTGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38534647	mCV24987616	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					T
ss52209734	NES15330468	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	A	A	A		A	A	T	A		A
ss147416518	ENSMUSSNP6031416	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss323430999	CHEV_10_102832627	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29324757					SNP	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52209734	NES15330468	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:103205854 () rs orientation: forward

Symbol	Name	Function Class
6430590A10Rik	RIKEN cDNA 6430590A10 gene	724 bp upstream
Cpgi2165	CpG island 2165	1028 bp distal
Gm66970	predicted gene, 66970	1327 bp upstream
Rr385217	regulatory region 385217	44 bp downstream
Rr438424	regulatory region 438424	1530 bp distal
Rr438425	regulatory region 438425	1029 bp distal
Slc6a15	solute carrier family 6 (neurotransmitter transporter), member 15	within coordinates
Tssr95607	transcription start site region 95607	647 bp downstream
Tssr95608	transcription start site region 95608	612 bp downstream
Tssr99159	transcription start site region 99159	924 bp upstream