rs29325717 SNP Detail

Summary

• ID
  rs29325717
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:103202794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTTGTTC TTGATGTCCA AAAAGAAAAC TTGAGAGAGT
  CCTTGGAAGG CCTACAAACG ATAACGTTTA TTGACATGTT AATTATCTTA AAAATGATGA
  M
  ATGTACCTCG CTGAAGAATG AAACCCATCC TCCTGTAATA TGTTCTAGGT TCCTTTTGCA
  TTTCCTTGAA AAATTTCAAG TGTCAACGAT CATAAATTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38544258	mCV24987582	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					A		C
ss52209779	NES15330522	PERLEGEN	MM_PANEL2	f	SNP	C		C	A	C	C	C		A	C	A	C		C	A	A	A		C
ss147416486	ENSMUSSNP1796879	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss323430993	CHEV_10_102829567	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29325717					SNP	C	C	C	A	C	C	C	A	A	C	A	C	C	C	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52209779	NES15330522	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:103202794 () rs orientation: forward

Symbol	Name	Function Class
6430590A10Rik	RIKEN cDNA 6430590A10 gene	256 bp downstream
Cpgi2165	CpG island 2165	515 bp proximal
Gm66970	predicted gene, 66970	within coordinates
Rr385217	regulatory region 385217	1064 bp upstream
Rr438423	regulatory region 438423	385 bp proximal
Rr438424	regulatory region 438424	921 bp proximal
Rr438425	regulatory region 438425	1531 bp proximal
Slc6a15	solute carrier family 6 (neurotransmitter transporter), member 15	850 bp upstream
Tssr95604	transcription start site region 95604	719 bp upstream
Tssr95605	transcription start site region 95605	759 bp upstream
Tssr95606	transcription start site region 95606	815 bp upstream