rs29325964 SNP Detail

Summary

• ID
  rs29325964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42738861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCAAGGA CTTTTAATAT
  ATTCAATACT GCTTGCGTGT GATAAAAATT TGAACAATAC CCTGAAGGAC AAAGACAGAA
  GTTTTAATAT TTTTTTGACT AGATGGTTGG AAAATCATGA CCAGATTGCC TTAAACCTTT
  CATAACATAG TAGTTTTTAT TTGTTTCTTT TAATCTTAAT GTTACATCTC GAATGCTTAA
  Y
  TGCAATAAAT TTAAGGAAAC ATAACAAGGA ATGCTCACTG AAGAATAGCT TTTCTGTTGG
  AAAGCGGGGT GTGGAACACA AAATTCAGAG TGTTTCTTAG GTCTTATCTG CAGTTTTTCT
  GGAGCCAAGG GCATACCACA CACACATGTA CACACCCCTT GTGCCGCACA CTTTAGAACA
  AGCAGCTACC TCTGAAAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38537501	mCV23431142	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss47857577	NES11970993	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	T	C		C	C	C	T	C	C	C
ss147083888	ENSMUSSNP5808121	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29325964					SNP	T	T	C	C	C	T	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47857577	NES11970993	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42738861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1495	CpG island 1495	1236 bp proximal
Gm34006	predicted gene, 34006	within coordinates
Gm66346	predicted gene, 66346	1824 bp upstream
Rr368979	regulatory region 368979	335 bp downstream
Scml4	Scm polycomb group protein like 4	within coordinates
Tssr93120	transcription start site region 93120	1277 bp downstream
Tssr97454	transcription start site region 97454	1132 bp downstream
Tssr97455	transcription start site region 97455	1356 bp downstream