rs29326066 SNP Detail

Summary

• ID
  rs29326066
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:86540136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA CTAACTTGCA GAGCTTATCA
  R
  CATAGCTTCA AATGCACCGA CCTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38544078	mCV24945238	ABI	CRAMUS_MOUSE	f	SNP		G	G		A	G
ss47925255	NES12039061	PERLEGEN	MM_PANEL2	f	SNP	A		G	G
ss147220948	ENSMUSSNP755017	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			G
ss323374050	CHEV_10_86167017	CHEVERUD	SCREENING_POP	f	SNP							G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29326066					SNP	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47925255	NES12039061	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86540136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2068	CpG island 2068	484 bp proximal
Gm54730	predicted gene, 54730	1044 bp downstream
Hsp90b1	heat shock protein 90, beta (Grp94), member 1	Intron
Rr436506	regulatory region 436506	1620 bp distal
Rr436507	regulatory region 436507	1006 bp proximal
Rr436508	regulatory region 436508	1227 bp proximal
Rr436509	regulatory region 436509	1583 bp proximal
Tssr95004	transcription start site region 95004	698 bp downstream
Tssr95005	transcription start site region 95005	9 bp upstream
Tssr95006	transcription start site region 95006	1584 bp upstream
Tssr95007	transcription start site region 95007	1611 bp upstream
Tssr98786	transcription start site region 98786	1248 bp upstream
Tssr98787	transcription start site region 98787	665 bp upstream
Tssr98788	transcription start site region 98788	55 bp downstream
Tssr98789	transcription start site region 98789	1115 bp downstream
Tssr98790	transcription start site region 98790	1181 bp downstream
Tssr98791	transcription start site region 98791	1213 bp downstream
Ttc41	tetratricopeptide repeat domain 41	1539 bp upstream