rs29326252 SNP Detail

Summary

• ID
  rs29326252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:122528522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGAGAAT CTTTCTAACT
  TTTGGAGATG TTTTCTGAGT TTTAAACTAA ACTGTCACGT TTTAAAGGGG TTGTGTTTCA
  GGTTAGTGAT TGGGAGAGCA ACGGGGCTCC CAAAACTGAG TATAGTGTCC CCAGAGATAT
  TCGCTCTTAA GTAACCATAT AGATTGTATA CATCTCCATC AGTGACTTGT TAGGCCTTAC
  R
  CAACCTTGCA GGACCACCAG TGTAATTAAT CACTGCAGGT CTGTGGGCAG ACAGACAGAC
  AGATCAATTA CTCGGTGAGC TGAGAGGGCC AAAGTGGCTT GTATAATGCC CTTTTAGGGA
  GATGATAAAT AGATTTTTTT TTAAGCATAA AAATTGATGC CTTCCTACCA GGTGGCCATT
  TCCATATTAT GTATGGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38545091	mCV23854515	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss52249033	NES15337110	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		G	A	A	G	G	A	G	G
ss147651268	ENSMUSSNP597142	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29326252					SNP	G	G	A	A	A	G	A	A	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52249033	NES15337110	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:122528522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2304	CpG island 2304	873 bp proximal
Ppm1h	protein phosphatase 1H (PP2C domain containing)	within coordinates
Rr226290	regulatory region 226290	within coordinates