rs29326401 SNP Detail

Summary

• ID
  rs29326401
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8762748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTTTT GTTTTGTTTT
  ACGTGGAAGA AACAGGCAAG GGGTATGTTC AAAATAAAAG TTAATTTTAT GGCCGCTAAG
  CCCATGCACA GTTCAGGCCT CGATATGTTA ATCAAGTGAA AATGCCAGAG GGAAATATCC
  CTGAAGAGGT CCTTTTTCCC TCTTCTCCCC CTCCTCCTCC TTTTAAAAAC CAATCAAAAA
  W
  TTTTTTCTAA GAGATGACAG TGCCTATCCT ATTTGATTTT GTGGCTGCTC ACTTTGTGAA
  ACTAAAGAAA CCCACGGAAT CTGCCCCTTA TTAAGGAGGT GGAGTGGAGA GGGGATGAAG
  TGAGGGTCCC CCGGATAGAA CAATTACTTC TGAAGTGTCT TCATCTCTTT CTCAGCTTTC
  ATACATTGAG AACAGCAGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38543088	mCV23688381	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss146767819	ENSMUSSNP863130	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
ss323245675	CHEV_10_8606802	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29326401					SNP	T	T	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8762748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1286	CpG island 1286	238 bp distal
Gm26674	predicted gene, 26674	126 bp downstream
Rr427412	regulatory region 427412	444 bp distal
Sash1	SAM and SH3 domain containing 1	934 bp upstream
Tssr96654	transcription start site region 96654	1306 bp upstream
Tssr96655	transcription start site region 96655	1119 bp upstream
Tssr96656	transcription start site region 96656	1057 bp upstream
Tssr96657	transcription start site region 96657	974 bp upstream
Tssr96658	transcription start site region 96658	928 bp upstream
Tssr96659	transcription start site region 96659	903 bp upstream
Tssr96660	transcription start site region 96660	879 bp upstream
Tssr96661	transcription start site region 96661	788 bp upstream
Tssr96662	transcription start site region 96662	759 bp upstream
Tssr96663	transcription start site region 96663	461 bp upstream
Tssr96664	transcription start site region 96664	392 bp upstream