rs29326891 SNP Detail

Summary

• ID
  rs29326891
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:103205473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAAAGGTA TTTTATGACT GCCTGTGCTC
  AGTAGCTTTC TGAAAAAGCC AGGACCAGAG CAGTCCCAAC AAGCTTCAAA CCCCGAGTGT
  CTCATTTTTT AAATGCAGAC ACAATTACAT CTTTTCCAGC TGGTACTACC CTGGAGTttt
  K
  tttgtttgtt tgtttgtttg tttgtttttg tttttgtttt tttTTTAGGC ACTTTATAAA
  TACTTGAAGA AATGAAGTTT CTTGTTTGTT CATTTACAGT ATGTGTATTT CTCTCCCACA
  CATTCCGATG ATTTTATATT ACCCTACCAA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38537957	mCV24987604	ABI	CRAMUS_MOUSE	f	SNP		T	G	G
ss147416507	ENSMUSSNP3659356	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
ss323430997	CHEV_10_102832246	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29326891					SNP	G	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:103205473 () rs orientation: forward

Symbol	Name	Function Class
6430590A10Rik	RIKEN cDNA 6430590A10 gene	343 bp upstream
Cpgi2165	CpG island 2165	647 bp distal
Gm66970	predicted gene, 66970	946 bp upstream
Rr385217	regulatory region 385217	within coordinates
Rr438423	regulatory region 438423	1759 bp distal
Rr438424	regulatory region 438424	1149 bp distal
Rr438425	regulatory region 438425	648 bp distal
Slc6a15	solute carrier family 6 (neurotransmitter transporter), member 15	within coordinates
Tssr95604	transcription start site region 95604	1943 bp downstream
Tssr95605	transcription start site region 95605	1865 bp downstream
Tssr95606	transcription start site region 95606	1776 bp downstream
Tssr95607	transcription start site region 95607	266 bp downstream
Tssr95608	transcription start site region 95608	231 bp downstream
Tssr99159	transcription start site region 99159	543 bp upstream