rs29326962 SNP Detail

Summary

• ID
  rs29326962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117937483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGAAATGA GGGGTGTTCG TTGTTAAACG TTTGGCAAAT
  CACACAGAAG TATCTGGAAT AAAACAAGAG CACTCCACAT CTCATAATGC CTACATAAAT
  Y
  AACATGGTGG CTGGAGGTTT CAAGCCTTTG ATCTGATTTA TTCATCTACT TATATTTTAA
  AATGGTTACT AGCTGCTGTG TGGAATGGGT TATGGACAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38542134	mCV24220238	ABI	CRAMUS_MOUSE	f	SNP		T	C			T	C
ss52223845	NES15336076	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T		C	T	T	C	T	T	T
ss147594615	ENSMUSSNP1901733	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29326962					SNP	T	T	C	C	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52223845	NES15336076	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117937483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2246	CpG island 2246	1620 bp proximal
Gm66186	predicted gene, 66186	1445 bp downstream
Gm66289	predicted gene, 66289	371 bp upstream
Rr369079	regulatory region 369079	1633 bp upstream
Rr402279	regulatory region 402279	589 bp downstream
Tssr3367	transcription start site region 3367	383 bp upstream
Tssr99497	transcription start site region 99497	1663 bp downstream