rs29327428 SNP Detail

Summary

• ID
  rs29327428
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8821083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAATAAAA CAAATCTTAG
  AACTTGAAAA TCCACAGCCT ACGTACCCCG AAGTCTTGGT CCTCCATGGA GAGAGCTGCT
  CGTGGCTTAG CGAGCCATAC GTTCAAATGA TACTGGACTT CCTCTCTGAC TCACGCATCC
  ACAGCTCTGA TGTAAGGCTC TTAGTGGGAA GCTGTTTTCA ATTCAGGGCA GATGTGGGAC
  W
  CTCATGTAGC CCTTGAGCTT ATGAACTTTA AAACAAATGG CCCGGAGGAT GATAAGTCTA
  GAGGCGGCAT CTGCTTCCTG AGGCCTCGCG GGGGCTCCTT CCAAACACTT AATGTATGAC
  ACTGTGACAG GAAAGCAAGC CTGGCTTATT AGGTTCTCAG CCTGTAAAGC GAAGTCTGCA
  AACATGCCTT AGACACAAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38537771	mCV23685933	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss146768450	ENSMUSSNP3318732	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
ss323245915	CHEV_10_8665137	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29327428					SNP	T	T	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8821083 () rs orientation: forward

Symbol	Name	Function Class
Gm48727	predicted gene, 48727	152 bp downstream
Gm67475	predicted gene, 67475	within coordinates
Rr427431	regulatory region 427431	within coordinates
Rr427432	regulatory region 427432	516 bp proximal
Tssr96665	transcription start site region 96665	70 bp upstream
Tssr96666	transcription start site region 96666	45 bp upstream