rs29327688 SNP Detail

Summary

• ID
  rs29327688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7505742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAAACTA AAGTCTTATT
  AGAAAATATA AAACCATATT TAAATAAGAT CTTCAAAGTG CCATTGCCTT CACAGACATT
  TTACAGTTAT TAAATTAATG AATCTATTTA TAGATGAGAC ATGGATTTCA GTATGTTTAC
  TCTCAACCAC ATTCTTCCTC ATACTACATT CACCCAGTCA CTCATTGAGC ATTTACTACA
  R
  AGCTATTAAA AAGCAAGCCT TGGGCTAGGA AGGCAGAGAG AAACAATGAA CACAGAGTCT
  CCATCCTGAA GAAATGCAGC CACATAGAGT GGACGAATGC TATGCATATC TACCTCCTAG
  AATATCATAA GACTACGACG CTTCCCCAGG ACTGTGGGCA GCATCTGGAC CTAGCAGACC
  TGTGTCCTTC TAGATTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38542342	mCV25377488	ABI	CRAMUS_MOUSE	f	SNP		A	A				G		G
ss52134651	NES15245540	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G		G	G	G		G	G		G
ss323244070	CHEV_10_7349776	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29327688					SNP	A	A	A	A	A	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52134651	NES15245540	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7505742 () rs orientation: forward

Symbol	Name	Function Class
Pcmt1	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	within coordinates
Rr220299	regulatory region 220299	142 bp distal
Rr220302	regulatory region 220302	59 bp proximal
Rr228712	regulatory region 228712	1459 bp proximal
Tssr92302	transcription start site region 92302	643 bp downstream