rs29328021 SNP Detail

Summary

• ID
  rs29328021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86168760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTGTATT CAGCTCAAAT
  GTATTAGAAG CCTGTGATGT TTCAGGTCCT CCTGGTTTCT CTGAGTAGGG CAGTTAGCCA
  GAATAAAAGT CCTTTTTGGG AGCCTGCATT CTATTGAGAA AATACAGTTA ATCAACAAAC
  AAGTGGCCTA ATGGTGGCAG GTGTCAGCTA GAACACAATG AGGCGAGAAA CATGATGGGG
  R
  GACTGTGGAC TTGGGGAGAA GGATGCAGGG AGGGAACAGA CATGGCAGCC TGACCAGGAT
  ATAGCAAATA GACAATGAAA GGAGCTATGC AGGAGTGAAG CAAGTGTCCA ACCCTAGCAA
  CTGCGAAGGG AAAGACTCTG GGCTGTGTGT TTGGAGTGGT GGGTACAGGA ATGGAGCAAG
  CTGCCATTCC CCGAGACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38540597	mCV24714868	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss147219110	ENSMUSSNP1131657	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss323373799	CHEV_10_85795641	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29328021					SNP	A	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86168760 () rs orientation: forward

Symbol	Name	Function Class
Rr436452	regulatory region 436452	312 bp distal
Rr436453	regulatory region 436453	within coordinates
Rr436454	regulatory region 436454	1707 bp proximal
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates
Tssr94967	transcription start site region 94967	1267 bp downstream
Tssr94968	transcription start site region 94968	1236 bp downstream