rs29328048 SNP Detail

Summary

• ID
  rs29328048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13430307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACAGACTG GAAGAAATGG GAGGGGCAAT GGAAAGTCTG
  AGACTGGGTG GAGTGTTGTG GATTTTCAGC CTCAAGCTTT GAACTTGTCC ATAGAGGAAA
  Y
  GCATGCACAT TTGCATGTAT TTGCCCTGGG AAGCAGTTCT TCTCAATCAA CCCCCATAGA
  CTGCTTTCCT AGAGCTTCAC TTTCTCTCAA TGGCCGTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38537417	mCV23067252	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29328048					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13430307 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	1078 bp distal
Pex3	peroxisomal biogenesis factor 3	1421 bp upstream
Rr368928	regulatory region 368928	1252 bp downstream
Rr427802	regulatory region 427802	1736 bp distal
Rr427803	regulatory region 427803	1659 bp distal
Rr427804	regulatory region 427804	1454 bp distal
Rr427805	regulatory region 427805	931 bp distal
Rr427806	regulatory region 427806	within coordinates
Tssr92399	transcription start site region 92399	1324 bp downstream
Tssr92400	transcription start site region 92400	1305 bp downstream
Tssr96771	transcription start site region 96771	1693 bp upstream
Tssr96772	transcription start site region 96772	1502 bp upstream
Tssr96773	transcription start site region 96773	1478 bp upstream
Tssr96774	transcription start site region 96774	1437 bp upstream
Tssr96775	transcription start site region 96775	1410 bp upstream
Tssr96776	transcription start site region 96776	1397 bp upstream