rs29328153 SNP Detail

Summary

• ID
  rs29328153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13428137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTGCCAGT CCTGACAACA CTGCAGAATA AGCACTGTGT
  TGATATATAG TTTGTACTTT ACAATTGGAG AACAGAAATT ATCTGCTGTA TATTTTACAG
  Y
  AACATGCTGT TTTCGGTTTA CCTTTAAACA CCACCTCAAA GAGCAGACTT AAGATAATGG
  CCCTAGAATA TTTCGAAACT CGTGTGAAAG GTTGAAAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38540042	mCV23067005	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss146822667	ENSMUSSNP7117434	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29328153					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13428137 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	514 bp upstream
Cpgi1315	CpG island 1315	458 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	546 bp upstream
Rr427802	regulatory region 427802	174 bp proximal
Rr427803	regulatory region 427803	435 bp proximal
Rr427804	regulatory region 427804	512 bp proximal
Rr427805	regulatory region 427805	717 bp proximal
Rr427806	regulatory region 427806	1999 bp proximal
Tssr92399	transcription start site region 92399	794 bp upstream
Tssr92400	transcription start site region 92400	852 bp upstream
Tssr96771	transcription start site region 96771	462 bp downstream
Tssr96772	transcription start site region 96772	606 bp downstream
Tssr96773	transcription start site region 96773	670 bp downstream
Tssr96774	transcription start site region 96774	718 bp downstream
Tssr96775	transcription start site region 96775	747 bp downstream
Tssr96776	transcription start site region 96776	762 bp downstream