rs29328808 SNP Detail

Summary

• ID
  rs29328808
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86169011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCAGGAT ATAGCAAATA
  GACAATGAAA GGAGCTATGC AGGAGTGAAG CAAGTGTCCA ACCCTAGCAA CTGCGAAGGG
  AAAGACTCTG GGCTGTGTGT TTGGAGTGGT GGGTACAGGA ATGGAGCAAG CTGCCATTCC
  CCGAGACAGA GAAGGCCCTC AGAGGCCCAG TTATGGGTGT GGCCTGTTAT CAGGAGCTCA
  K
  CGTTGGATAA GTACCTCACA CAGCTCAGCA GACTATCAGG GGAGAGCACC ATAGAAAGGC
  ATAGAAGTCA TGGAAGTTCT GGATTGGGGT TTCCAAGCAG TTGGTCATTG TCACTTGCAT
  GGGCTGCATA GAAAACCACA GTTGTGAGTA AAGAGAATGA TTAAGTAGGA ACACACCATT
  GATTGGACTG GGTCTCTTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38541851	mCV24714857	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	G	G
ss147219120	ENSMUSSNP2499616	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		G
ss323373801	CHEV_10_85795892	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29328808					SNP	G	T	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86169011 () rs orientation: forward

Symbol	Name	Function Class
Rr436452	regulatory region 436452	563 bp distal
Rr436453	regulatory region 436453	within coordinates
Rr436454	regulatory region 436454	1456 bp proximal
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates
Tssr94967	transcription start site region 94967	1518 bp downstream
Tssr94968	transcription start site region 94968	1487 bp downstream