rs29329495 SNP Detail

Summary

• ID
  rs29329495
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90917997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC TACAACAGAA CTTGCAAAGA
  R
  CCTGCCCAGA GGAGCTTGGG GAGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38543238	mCV24611886	ABI	CRAMUS_MOUSE	f	SNP		A	G
ss147290223	ENSMUSSNP6699582	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323387273	CHEV_10_90544880	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29329495					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90917997 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	48 bp proximal
Ikbip	IKBKB interacting protein	805 bp upstream
Rr402144	regulatory region 402144	719 bp upstream
Rr436976	regulatory region 436976	within coordinates
Rr436977	regulatory region 436977	284 bp proximal
Tssr95222	transcription start site region 95222	32 bp downstream
Tssr95223	transcription start site region 95223	889 bp upstream
Tssr95224	transcription start site region 95224	901 bp upstream
Tssr95225	transcription start site region 95225	946 bp upstream
Tssr98900	transcription start site region 98900	421 bp downstream
Tssr98901	transcription start site region 98901	518 bp downstream
Tssr98902	transcription start site region 98902	548 bp downstream
Tssr98903	transcription start site region 98903	569 bp downstream
Tssr98904	transcription start site region 98904	648 bp downstream