rs29330371 SNP Detail

Summary

• ID
  rs29330371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4214511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCAAATG TGCTGACTTT
  ATTGTTCTCC CCTGCTTTTG CTGTGGGGAT AGAACTCAAT GCCCTTAATC CTAGGCTCTG
  CATCAAAGCC ACACCCAGGC TGTTTCAGCA GCGTTTTTAA GTTCCTACCA TCCTGAGGAA
  GGACTAGGGT GGACCTTAAA GTCACATGCT CACTGGATCC CTCCCTCATA TCCATCTACC
  R
  ACTATGAATC CTTGGATACA CAAAAATTTG CCTTCTTTGG TTAATCCCCT TCCCTTTCTC
  TATTGGTAAT CTGTATGCCA TTGGGTTGTT ATAAGGATTA CATACGATGA TATACGCAAT
  GTTTTTTTGT TCTTTGTTTT GTTTTTTGAA TAGTACCTGA TACAAAATGA GAACTTTCAA
  GTTTGGGCCA GAGACATGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38556377	mCV25201820	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss146743561	ENSMUSSNP4113774	ENSEMBL	ENSEMBL_Sanger	r	SNP			T		C
ss323240840	CHEV_10_6082030	CHEVERUD	SCREENING_POP	r	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29330371					SNP	A	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4214511 () rs orientation: forward

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	1869 bp upstream
Cpgi1267	CpG island 1267	1791 bp proximal
Cpgi1268	CpG island 1268	1066 bp proximal
Gm67397	predicted gene, 67397	969 bp downstream
Gm67407	predicted gene, 67407	791 bp upstream
Rr384063	regulatory region 384063	within coordinates
Rr426944	regulatory region 426944	1379 bp proximal
Tssr3113	transcription start site region 3113	1606 bp upstream
Tssr92240	transcription start site region 92240	1812 bp upstream
Tssr92241	transcription start site region 92241	1842 bp upstream