rs29332565 SNP Detail

Summary

• ID
  rs29332565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86287563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACAATCA TCTACAGACA
  AGTCCACAGG TCAATCTGAT CTAGTCAGTT CCCGGGTTGA TGCTCTCAGG CGATTCTACA
  CTGAGACAAG ATGACACTGA AAATGAACTA CCACCATGAC TAGAGTTAGC AAACATTTAA
  ATACAATATT TGCATCCCTT CTTTGATGAC TACAGCTCAT AAGGACACAT CCAGACTGTA
  R
  CAGCATGGCA ATGGCCAGCG TGGTCTTTAC TCTTAATTCC CATTCTTCCC TAGTTCTCAG
  TTACTCTCCT CTCTCCATTC TTCACTCTGC ACCCCTGCAG ATTCCAGTGT TCTTCTCCCT
  AGTACTTGAC CTTCTCATCA ACCCCCAAGA GGGAATGGGG CAGGATCGCC ACCCATATCC
  TGTAGATGGA GAAGTTGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38552236	mCV23609855	ABI	CRAMUS_MOUSE	f	SNP		A	A				G		G
ss47923719	NES12028024	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G		G	G	G	G		G	A	A	G		G
ss147219931	ENSMUSSNP692077	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss323373940	CHEV_10_85914444	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29332565					SNP	G	A	A	A	A	G	G	G	G	G	G	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47923719	NES12028024	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86287563 () rs orientation: forward

Symbol	Name	Function Class
Rr217202	regulatory region 217202	38 bp proximal
Rr229241	regulatory region 229241	334 bp proximal
Syn3	synapsin III	within coordinates