rs29333257 SNP Detail

Summary

• ID
  rs29333257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13429970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTTCATAA GAAATTAAAA TCTAGAAGAC AGAAACATGT
  TTTCCACCCC ACGCCCCCAG ACAAATGGCA TAATGCATTC TTTTAATTTT TTAATTAACA
  Y
  CTTTTTTTTT TTTTTTTTTT TTTTTGGTCA TCTTTCTCAG AGCTCGGGGT GGGAAGAAGA
  GAGCCTTTGT TCATCAGTTG TCGAGTTGAG AATTTGTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38556290	mCV23067234	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss146822732	ENSMUSSNP2009605	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29333257					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13429970 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	741 bp distal
Pex3	peroxisomal biogenesis factor 3	1084 bp upstream
Rr368928	regulatory region 368928	915 bp downstream
Rr427802	regulatory region 427802	1399 bp distal
Rr427803	regulatory region 427803	1322 bp distal
Rr427804	regulatory region 427804	1117 bp distal
Rr427805	regulatory region 427805	594 bp distal
Rr427806	regulatory region 427806	166 bp proximal
Tssr92399	transcription start site region 92399	987 bp downstream
Tssr92400	transcription start site region 92400	968 bp downstream
Tssr96771	transcription start site region 96771	1356 bp upstream
Tssr96772	transcription start site region 96772	1165 bp upstream
Tssr96773	transcription start site region 96773	1141 bp upstream
Tssr96774	transcription start site region 96774	1100 bp upstream
Tssr96775	transcription start site region 96775	1073 bp upstream
Tssr96776	transcription start site region 96776	1060 bp upstream