rs29335282 SNP Detail

Summary

• ID
  rs29335282
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42404328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTGTGT GCAGAGAGAC
  CAGAAGGTGT CAGCTGTCCT GAAACTGGCA TTACAGACAG TGTGAGCTGC CATGTGTGTT
  CTGGAAATGG AACCTGGGTT CTCTTGAAGA GCAGTCAGTG CTCTTAGCCA GCAAGCTATC
  TTTCCAGCTC TTATTATCTT TCTTCATTTG CCATCTTAGG AATGAAACCC AGGGACTCAC
  R
  CGTTAGAAGA ATGCCCATCC ACAAAGATAG GTACCGATCT CTAGCGATTC ATCATTCGAT
  AGATGCTTAG GTTGCTACTG TTCTTGACTA ACCACCTACG ATTATGTTGC TGAATTACAT
  AACTTAAGAT TTTGTTATTA CATTTGGGTA TGTGCATGTG TGCCTGCAGT CATGAGTGTC
  ACAGCCAGGA CAGCTCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38566957	mCV23303292	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss61273599	NES16777578	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		A	G	G	A	G	G	A
ss147079698	ENSMUSSNP3597686	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29335282					SNP	A	A	G	G	G	A	G	G	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273599	NES16777578	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42404328 () rs orientation: forward

Symbol	Name	Function Class
Rr219442	regulatory region 219442	328 bp distal
Rr227589	regulatory region 227589	1729 bp distal
Snx3	sorting nexin 3	within coordinates